AlphaGenome PyTorch Documentation
==================================

PyTorch implementation of the `AlphaGenome DNA sequence-to-function model <https://www.biorxiv.org/content/10.1101/2025.06.25.661532v2>`_.

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   installation
   quickstart
   named_outputs
   full_chromosome_prediction
   cli
   performance
   finetuning/index
   api/index


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`