Index A | C | D | F | G | M | O | P | R | S | T | U A alphagenome_pytorch.attention module alphagenome_pytorch.convolutions module alphagenome_pytorch.embeddings module alphagenome_pytorch.heads module apply_rope() (in module alphagenome_pytorch.attention) AttentionBiasBlock (class in alphagenome_pytorch.attention) C ContactMapsHead (class in alphagenome_pytorch.heads) ConvBlock (class in alphagenome_pytorch.convolutions) D DnaEmbedder (class in alphagenome_pytorch.convolutions) DownResBlock (class in alphagenome_pytorch.convolutions) F forward() (alphagenome_pytorch.attention.AttentionBiasBlock method) (alphagenome_pytorch.attention.MHABlock method) (alphagenome_pytorch.attention.MLPBlock method) (alphagenome_pytorch.attention.PairMLPBlock method) (alphagenome_pytorch.attention.PairUpdateBlock method) (alphagenome_pytorch.attention.RowAttentionBlock method) (alphagenome_pytorch.attention.SequenceToPairBlock method) (alphagenome_pytorch.convolutions.ConvBlock method) (alphagenome_pytorch.convolutions.DnaEmbedder method) (alphagenome_pytorch.convolutions.DownResBlock method) (alphagenome_pytorch.convolutions.StandardizedConv1d method) (alphagenome_pytorch.convolutions.UpResBlock method) (alphagenome_pytorch.embeddings.OutputEmbedder method) (alphagenome_pytorch.embeddings.OutputPair method) (alphagenome_pytorch.heads.ContactMapsHead method) (alphagenome_pytorch.heads.GenomeTracksHead method) (alphagenome_pytorch.heads.MultiOrganismConv1d method) (alphagenome_pytorch.heads.MultiOrganismLinear method) (alphagenome_pytorch.heads.SpliceSitesClassificationHead method) (alphagenome_pytorch.heads.SpliceSitesJunctionHead method) (alphagenome_pytorch.heads.SpliceSitesUsageHead method) G GenomeTracksHead (class in alphagenome_pytorch.heads) M MHABlock (class in alphagenome_pytorch.attention) MLPBlock (class in alphagenome_pytorch.attention) module alphagenome_pytorch.attention alphagenome_pytorch.convolutions alphagenome_pytorch.embeddings alphagenome_pytorch.heads MultiOrganismConv1d (class in alphagenome_pytorch.heads) MultiOrganismLinear (class in alphagenome_pytorch.heads) O OutputEmbedder (class in alphagenome_pytorch.embeddings) OutputPair (class in alphagenome_pytorch.embeddings) P PairMLPBlock (class in alphagenome_pytorch.attention) PairUpdateBlock (class in alphagenome_pytorch.attention) predictions_scaling() (in module alphagenome_pytorch.heads) R reset_parameters() (alphagenome_pytorch.heads.MultiOrganismConv1d method) (alphagenome_pytorch.heads.MultiOrganismLinear method) RowAttentionBlock (class in alphagenome_pytorch.attention) S scale() (alphagenome_pytorch.heads.GenomeTracksHead method) SequenceToPairBlock (class in alphagenome_pytorch.attention) SpliceSitesClassificationHead (class in alphagenome_pytorch.heads) SpliceSitesJunctionHead (class in alphagenome_pytorch.heads) SpliceSitesUsageHead (class in alphagenome_pytorch.heads) StandardizedConv1d (class in alphagenome_pytorch.convolutions) T targets_scaling() (in module alphagenome_pytorch.heads) U unscale() (alphagenome_pytorch.heads.GenomeTracksHead method) UpResBlock (class in alphagenome_pytorch.convolutions)